【Objective】 In order to investigate the difference of physiological responses of invasive plant Cenchrus pauciflorus and its native associated species Setaria viridis to drought stress.【Method】 The seedlings of two plants were used as the research objectand PEG 6000 solution was used to simulate drought stress. Four treatment levels were set (CK,mild LD,moderate MD and severe SD)and PEG concentrations were 0%,5%,10% and 15%,re- spectively. The relative water content (RWC),chlorophyll (Ch l) content,protective enzyme,soluble protein(SP) and other physiological indexes of the two plants were determined. The comprehensive evaluation of drought resis- tance was carried out by membership function analysis.【Result】 The results showed that:1) with the increase of the degree of the drought stress,the contents of free amino acids (FAA),soluble protein (SP) and the activities of per- oxidase (POD) and catalase (CAT) increased firstly and then decreased,RWC content decreased gradually,malondi- aldehyde (MDA) and soluble sugar (SS) contents increased continuously,The Ch l content of Cenchrus pauciflorus showed a decreasing trend,and that of Setaria viridis showed a decreasing first and then increasing trend;2) POD ac- tivity of C. pauciflorus was the highest under moderate stress (224. 867 U/g),and CAT activity of S. viridis was the highest under moderate drought stress (72. 667 U/g);3) The comprehensive evaluation of drought resistance showed that the drought resistance level of the seedlings of the two plants was basically the same.【Conclusion】 The two plants showed different physiological characteristics to adapt to the arid habitat under drought stress. Although there were differences in physiological response,both plants had strong drought tolerance.