【Objective】 In order to reveal the response and regulation mechanism of the root of alfalfa seedlings with different root types to drought stress.【Method】 Three root types of alfalfa (rhizomatous rooted Medicago sativa ‘Qingshui’,tap rooted M. sativa‘Longdong’,creeping rooted M. Varia Martin ‘Gongnong No. 4’) were cultured in river sand with nutrient solution,control (CK),moderate (M),and severe (S)drought treatments were set up to study the effects of drought stress on root physiological characteristics and anatomical structure.【Result】 The con- tents of soluble protein,soluble sugar,proline and MDA,as well as the activities of SOD,POD and CAT increased significantly in most root types of alfalfa under drought stress. The increase of MDA content of Qingshui was rela- tively small,which was related to the increase of osmotic adjustment substance (proline,soluble sugar andsoluble pro- tein) and antioxidant protective enzyme system (POD,SOD,and CAT activities). The responses of proline and soluble sugar contents,POD and SOD activities were more sensitive in the root of seedling stage. The xylem area, phloem area,xylem vessel number,vessel area,and vessel diameter increased significantly with the increase of drought stress,while the cortex thickness decreased significantly.【Conclusion】 The root systems of alfalfa seedlings with different root types maintained their normal physiological and metabolic functions and resisted drought stress by regulating osmotic regulators,antioxidant protective enzymes and internal anatomical structure of root during seedling stage.